Principles of Sensory Coding
The sensory system is a part of our nervous system that processes sensory information. Through the five sense-doors, it is responsible for giving direct representations of the outside world. Some key principles govern the way our sensory system works. First, the sensory system extracts sensory information arriving based on the type of stimulus (modality), location, intensity, and duration. Second, the arriving stimulus creates certain perceptual experiences within us. The conversion of stimulus information into neural signals by the sensory system is called sensory coding.
Arriving external stimuli will be captured as energy by specialized peripheral "sensors" called receptors. These sensitive organs can be found in all five senses: eyes, ears, nose, tongue, and bodily receptors. The basic sensory modalities include light, sound, smell, taste, temperature, and pressure. Law of receptor specificity says that different nerve fibers are dedicated to different sensory modalities.
- Location coding: we are aware of a specific site of touching or pressure (location of the stimulus) as it impinges a specific receptor on the skin. Such receptor is broadly called the receptor field. This receptor field in turn makes a specific connection in the brain such that different areas in the brain are stimulated. Location coding is not preserved in the chemosensory modality.
- Intensity coding: the greater the stimulus intensity beyond a certain threshold of detection (see: Psychophysics), the greater the output of the receptor. More importantly, the intensity of a stimulus is coded in frequency terms -- the greater the stimulus intensity, the greater the discharge rate of action potential. However, other non-sensory factors are able to influence this frequency: fatigue, motivation, etc.
- Duration coding: our awareness stay as long as the stimulus exists. To some senses, the awareness of a stimulus may decline over time, a process called adaptation, and it is caused by the way ion channels work. E.g. we perceive the cushion-like feeling when we first sit on the chair, but that awareness gradually disappears.
- From the receptors, signals are transmitted through several anatomically distinct pathways following a concept of parallel pathways. Parallel processing is an important feature of hierarchical sensory processing. Brain compartments that process sensory information have an orderly, topographic, structured representation. The sensory systems do not enjoy equal representation in the brain (e.g. the somatotopic map of touch perception).
The visual system, centered on the Occipital Cortex, is arguably the most dominant percept. Among the senses, however, the somatosenses or the perception of 'body' is intimately related to the motor cortex to plan and guide goal-directed movement. This post attempts to summarize their neural substrates and behavior.
There are three types of somatosenses based on the modality, the type of stimuli our brain perceives. First, the mechanoreceptors detect touch, pain, and temperature stimuli, and are embedded inside the dermal layer of the skin. A wide variety of receptors are able to detect vibration, stretch, pressure, shape, and texture. The proprioception & kinesthesia, embedded mainly in the joints and muscles, detect the position and movement of the trunk and limbs. And lastly, the senses of the internal organs in the body detect pain sensation or discomfort.
Proprioception is one of the core themes in my lab. Originally thought only to be sensed by certain sensory neurons in the muscle, proprioceptive information is also received by other mechanoreceptors in the skin and muscles. There is a set of specialized sensory neurons coming from the muscles. Embedded deep inside the extrafusal fibers is a set of muscle spindles that carry Type Ia and II sensory neurons. They encode muscle length or stretch. When the muscles contract, however, they lose sensitivity and fire less. It is the gamma motor neurons that increase or offset the loss of sensitivity by introducing tension to the muscle spindle. Type Ia neurons, in particular, are sensitive to the change in the stretch over time or velocity. Type Ib sensory neurons originate in the tendon organ that encodes muscle tension, but not stretch or length. Microelectrode recording is able to distinguish their discharge pattern in response to a certain behavior manipulation.
The Ascending Pathways
The spinal cord plays a critical role as it contains massive highways from and to the brain. Cross-sectionally, the spinal cord is divided into the core grey matter (H-shaped butterfly) surrounded by white matter. The ventral portion of the grey matter contains cell bodies of alpha motor neurons. The dorsal portion contains sensory axons and cell bodies of interneurons. The spinal cord is important for short-latency reflex.
The spinal cord serves as the base in the motor hierarchy but it is the first station of the sensory inflow to the brain.
Proprioception is one of the core themes in my lab. Originally thought only to be sensed by certain sensory neurons in the muscle, proprioceptive information is also received by other mechanoreceptors in the skin and muscles. There is a set of specialized sensory neurons coming from the muscles. Embedded deep inside the extrafusal fibers is a set of muscle spindles that carry Type Ia and II sensory neurons. They encode muscle length or stretch. When the muscles contract, however, they lose sensitivity and fire less. It is the gamma motor neurons that increase or offset the loss of sensitivity by introducing tension to the muscle spindle. Type Ia neurons, in particular, are sensitive to the change in the stretch over time or velocity. Type Ib sensory neurons originate in the tendon organ that encodes muscle tension, but not stretch or length. Microelectrode recording is able to distinguish their discharge pattern in response to a certain behavior manipulation.
| Fig-1: Major ascending pathways; taken from [3]. |
The Ascending Pathways
The spinal cord plays a critical role as it contains massive highways from and to the brain. Cross-sectionally, the spinal cord is divided into the core grey matter (H-shaped butterfly) surrounded by white matter. The ventral portion of the grey matter contains cell bodies of alpha motor neurons. The dorsal portion contains sensory axons and cell bodies of interneurons. The spinal cord is important for short-latency reflex.
The spinal cord serves as the base in the motor hierarchy but it is the first station of the sensory inflow to the brain.
Sensory information from the trunk and limbs enters the spinal cord and travels up to the cerebral cortex through the thalamus, the ventral-posterior-lateral nucleus.
The pathways called the ascending sensory pathways, work in parallel to ensure timely information delivery. The cell bodies of the sensory receptors are collectively called the dorsal root ganglion.
Two sensory pathways are present depending on the type of modality. The more precise receptors (touch, kinesthesia) ascend to the medulla and the thalamus through dorsal columns. The axons cross at the medulla forming the medial lemniscus to the opposite side of the brain, just like the descending motor pathways and hence contralateral in nature. The second pathway is dedicated to more poorly localized percepts such as pain and temperature. Upon entering the gray matter, the axons immediately cross and form the spinothalamic tract up to the thalamus. This tract is part of the bigger anterolateral pathways.
Thalamus as a Relay System
Thalamus is an important structure near the middle of the cerebral hemisphere, medial and caudal to the basal ganglia. It has two lobes in both left/right hemispheres and receives information from one part of the central nervous system (e.g. basal ganglia, cerebellum, motor cortex) and sends it to the other region through projection fibers. It is an essential link between sensory receptors and the cortex for all modalities except olfaction. This oval-shaped structure is situated bilaterally and consists of several distinct nuclei.
There are two types of thalamic nuclei in the thalamus: specific and non-specific. The name arises due to the way the nucleus is related to different brain regions. The non-specific nuclei, mainly in the internal medullary lamina, possess complicated input-output connections and does not bear selectivity or specificity to a certain cortical region or cortical function. The specific thalamic nuclei, whose outputs are excitatory (glutamatergic system), consist of four main divisions:
The Somatosensory Cortex
Axons in the ventral-posterior-lateral nucleus terminate primarily in the postcentral gyrus, or more popularly now as the primary somatosensory cortex or S1. It is situated between the central sulcus and postcentral sulcus, caudal to the primary motor cortex. We gain insights into this area by using the same electrical stimulation technique similar to the ones used in cortical motor experiments. Penfield found that these neurons are sensitive to tactile stimulation of the skin surface. Other scientists e.g. Woolsey, Kaas, etc. performed similar experiments on monkeys.
Like the primary motor cortex, the bodily representation in S1 is arranged in an orderly fashion or somatotopic. It turns out that the topography is not simple and the postcentral gyrus is further subdivided into Area 3a, 3b, 1, and 2 (correspondingly BA-3a/b, BA-1, and BA-2). Area 3 processes the basic somatosensory information and is arguably the only S1-proper as it receives the most projections from the thalamus. Neurons in BA-3a/b are found to have the smallest receptive fields. So what are the functional divisions of the somatosensory cortex?
The cortical-body mapping is represented by the homunculus map. Just like M1, the larger the area in S1 of a certain body map, the greater the number of 'computational efficiency' power involved. For example: our highly discriminative sense of touch in the index finger is due to the large area in S1 dedicated to processing somatosensory stimuli from this part of the body. By virtue of synaptic plasticity, it is important to note that the mapping can be modified by experience. Experiments in monkeys (e.g. Jenkins and Merzenich, et al., 1990) focusing on tactile sensation have shown that the cortical representation of the digits expands after repeated training or usage of that digits.
Two sensory pathways are present depending on the type of modality. The more precise receptors (touch, kinesthesia) ascend to the medulla and the thalamus through dorsal columns. The axons cross at the medulla forming the medial lemniscus to the opposite side of the brain, just like the descending motor pathways and hence contralateral in nature. The second pathway is dedicated to more poorly localized percepts such as pain and temperature. Upon entering the gray matter, the axons immediately cross and form the spinothalamic tract up to the thalamus. This tract is part of the bigger anterolateral pathways.
Thalamus as a Relay System
Thalamus is an important structure near the middle of the cerebral hemisphere, medial and caudal to the basal ganglia. It has two lobes in both left/right hemispheres and receives information from one part of the central nervous system (e.g. basal ganglia, cerebellum, motor cortex) and sends it to the other region through projection fibers. It is an essential link between sensory receptors and the cortex for all modalities except olfaction. This oval-shaped structure is situated bilaterally and consists of several distinct nuclei.
There are two types of thalamic nuclei in the thalamus: specific and non-specific. The name arises due to the way the nucleus is related to different brain regions. The non-specific nuclei, mainly in the internal medullary lamina, possess complicated input-output connections and does not bear selectivity or specificity to a certain cortical region or cortical function. The specific thalamic nuclei, whose outputs are excitatory (glutamatergic system), consist of four main divisions:
- Anterior division: consists only of one nuclei and is linked to the mammillary bodies (part of the hypothalamus) and hippocampal formation, the cingulate and frontal lobe.
- Medial division: it is connected to the basal ganglia, amygdala, and the midbrain, been implicated in memory.
- Ventral division: the division that is very important for sensorimotor-related behavior. The ventro-anterior and ventro-lateral nuclei send information from the basal ganglia and cerebellum to motor cortex. We just mention the area that's involved in sending somatosensory information to S1.
- Posterior division: this area is mainly for the auditory (medial geniculate nucleus) and visual system (lateral geniculate nucleus); there is also the pulvinar nuclei that carry various functions and are interconnected to the parietal and occipital lobe.
The Somatosensory Cortex
Axons in the ventral-posterior-lateral nucleus terminate primarily in the postcentral gyrus, or more popularly now as the primary somatosensory cortex or S1. It is situated between the central sulcus and postcentral sulcus, caudal to the primary motor cortex. We gain insights into this area by using the same electrical stimulation technique similar to the ones used in cortical motor experiments. Penfield found that these neurons are sensitive to tactile stimulation of the skin surface. Other scientists e.g. Woolsey, Kaas, etc. performed similar experiments on monkeys.
Like the primary motor cortex, the bodily representation in S1 is arranged in an orderly fashion or somatotopic. It turns out that the topography is not simple and the postcentral gyrus is further subdivided into Area 3a, 3b, 1, and 2 (correspondingly BA-3a/b, BA-1, and BA-2). Area 3 processes the basic somatosensory information and is arguably the only S1-proper as it receives the most projections from the thalamus. Neurons in BA-3a/b are found to have the smallest receptive fields. So what are the functional divisions of the somatosensory cortex?
- Proprioceptive sensory information from the muscles and joints is represented in Area 3a.
- Cutaneous and tactile information is represented in Area 3b.
- Area 3a/3b sends projections to Area 1 where higher-order processing takes place.
- Lastly, Area 2 is where information from Area 1 is fused with information from muscles and joints to facilitate richer tactile recognition related to grasping such as size and shape, and joint information while moving. The cells have the largest receptive fields.
| Fig-2: The primary somatosensory cortex; adapted from [2]. Note how the coronal section reveals BA-4 as well. |
What's next? S1 and beyond
From the primary area, somatosensory information is transmitted to secondary areas such as the second somatosensory area (SII), insula, and parietal association areas. Okie, honestly their functionalities are rather vague and mixed. The second somatosensory cortex (SII, or S2) is located on the upper ceiling of the lateral fissure, an area called the parietal operculum. It receives inputs from all four divisions of the primary somatosensory cortex. These inputs appear to be crucial for if they are removed, SII will not elicit any response to tactile stimulation. Removal of SII neurons, on the other hand, do not influence neural response in S1. SII has projections to the insular cortex and temporal areas associated with tactile memory. One function of the insular cortex in body awareness is in understanding and judging pain.The somatosensory cortex is also tightly linked to other, more posterior areas in the parietal lobe. Areas such as BA-5 and BA-7 receive inputs from S1 and are important in guiding movements, i.e. reaching and grasping. However, to make movements, we need visual inputs and proper decision-making. The integration of visual and somatosensory codes occurs in the posterior parietal cortex and it is often called the somatosensory association areas. The areas send projections to the frontal lobe, parahippocampal region, cingulate gyrus, etc. for higher-order cognition and learning. These areas integrate sensory information of multiple modalities and hence they are multimodal.
| Fig-3: Relationship between S1 and the association sensory cortex of the brain; taken from [1]. It can be seen that neurons in S1 project to M1, and the so-called secondary motor and somatosensory cortices. |
Final remark: the homunculus
Homunculus describes the somatotopic mapping of afferent and efferent projections that are responsible for our movement and bodily senses. Typically, a large area of the body in the brain corresponds to higher processing resources in the brain (and vice versa). Humans are well-known to possess good fine motor skills as shown by the large hand representation in the motor and somatosensory cortices. See below.
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| Fig-4: Homunculus of the somatosensory (afferent) and motor (efferent) projections. |
As mentioned, the primary motor cortex (M1) receives a large projection from S1. Both areas are also organized in an orderly somatotopic fashion. One advantage of having the motor and somatotopic maps in close proximity (i.e., on either side of the central sulcus) is that it permits a more precise registration in the connectivity. The specificity in terms of bodily representation between M1 and S1 is reflected by the homotopic connection.
References
This connection is understandable given how closely the two systems must cooperate when we physically interact with an object. Indeed, the projections of S1 to M1 are organized in a homotopic fashion—that is, a given part of the motor cortex receives projections from the same part on the body map of the somatosensory cortex. Such interaction requires processes that rely on feedback signals from tactile receptors in the skin and proprioceptive receptors in the muscles.
[1] Chapter 18 - The Functional Organization of Perception and Movement. In Kandel E.R. et. al. (2000). Principles of Neural Science 4e, McGraw-Hill.
[2] Figure 20-1 (p.384) and Figure 23-1 (p.453). In Kandel E.R. et. al. (2000). Principles of Neural Science 4e, McGraw-Hill.
[3] Chapter 7 - Audition, Chemical, Body Senses. In Carlson, Neil R. (2013). Physiology of Behavior 11e. Pearson Education.
[2] Figure 20-1 (p.384) and Figure 23-1 (p.453). In Kandel E.R. et. al. (2000). Principles of Neural Science 4e, McGraw-Hill.
[3] Chapter 7 - Audition, Chemical, Body Senses. In Carlson, Neil R. (2013). Physiology of Behavior 11e. Pearson Education.

